Journal of Biological Rhythms
○ SAGE Publications
Preprints posted in the last 90 days, ranked by how well they match Journal of Biological Rhythms's content profile, based on 25 papers previously published here. The average preprint has a 0.02% match score for this journal, so anything above that is already an above-average fit.
Kim, A. B.; Linning-Duffy, K.; Balbach, M.; Lucera, N.; Delgado, M.; Kummur, N.; Toh, H.; Caldas, L.; Yan, L.
Show abstract
The circadian system evolved under natural light-dark cycles, while modern humans spend much of their time indoors under electric lighting that differs substantially from daylight in intensity, spectral composition, and temporal structure. How such lighting environments influence circadian system has not been systematically examined in a diurnal animal model under ecologically relevant conditions. In this study, we used the diurnal Nile grass rat (Arvicanthis niloticus) to assess daily locomotor rhythms across four lighting conditions designed to approximate common human exposure scenarios: rectangular daylight (D65-R; [~]5,600 lux), semi-sigmoidal daylight mimicking natural intensity dynamics (D65-S; matched peak intensity with [~]50% lower cumulative energy), fluorescent indoor light (F12; [~]150 lux), and fluorescent light supplemented with a one-hour midday daylight pulse (F12+D65-P). Using a within-subject design (n = 8), male grass rats were housed under each condition for two weeks. D65-R produced the highest daytime activity levels and the strongest day/night activity ratio, consistent with robust circadian entrainment. Despite matching peak intensity, D65-S did not yield comparable circadian outcomes, indicating that cumulative photon exposure, rather than peak intensity alone, contributes to entrainment strength. Notably, the addition of a one-hour midday daylight pulse (D65-P) partially increased circadian amplitude under otherwise fluorescent conditions, with higher periodogram amplitude relative to F12 alone. A separate cohort of males was exposed to D65-R or F12 for six weeks (n = 10/condition) to assess physiological outcomes, including metabolic and reproductive measures. Compared with the D65-R group, F12 group showed higher diabetic rate (10% vs. 40%) and reduced sperm mobility (45{+/-}6 vs. 19{+/-}1 %), consistent with potential downstream correlates of circadian rhythm disruption. Together, these findings demonstrate that lighting conditions characteristic of indoor environments produce weaker circadian organization than daylight-equivalent lighting in a diurnal rodent, which underscore the importance of light quality in shaping circadian rhythms and downstream physiological processes.
Morales Fenero, C.; Sacksteder, R. E.; Kimmey, J. M.
Show abstract
Circadian clocks coordinate physiological and behavioral rhythms by synchronizing biological processes with environmental cues. These rhythms emerge during development, but it remains unclear whether their component genes are activated by a common program or assembled through distinct regulatory pathways. To address this, we used longitudinal luciferase reporters to monitor per3 and per2 expression across zebrafish embryonic and larval development. Although both genes are canonical components of the circadian clock, they showed strikingly different developmental regulation. Two temporal frames of circadian gene expression were identified: an embryonic stage and a larval stage, each evident under different entrainment conditions. Per3 displayed early rhythmic expression in light/dark conditions, which was independent of per2 and cry1a light-entrainment regulation, but required bmal activity. Meanwhile, per2 displayed light-responsive transcription and remained largely bmal-independent. At the same time, both genes exhibited an endogenous embryonic expression that could not be explained solely by light-driven regulation, indicating that developmental inputs contribute to clock gene activation before mature larval rhythms are established. These findings demonstrate that the zebrafish circadian system is not assembled through a single synchronized onset of clock gene expression, but through gene-specific regulatory programs that shift across development.
Paik, A.; Trzeciak, J.; Harrington, C.; Steele, A.
Show abstract
Food anticipatory activity (FAA) is a robust behavioral output of food-entrained circadian rhythms, characterized by increased locomotor activity prior to scheduled feeding. Despite the social nature of rodents, FAA is almost exclusively studied in singly housed animals, leaving the influence of social context largely unexplored. Here, we used implanted wireless devices to measure individual locomotor activity and subcutaneous body temperature in group-housed mice and compared these measures to singly housed controls. Social housing significantly suppressed FAA in both male and female mice. In parallel, preprandial increases in body temperature were markedly attenuated in group-housed animals. These findings demonstrate that FAA is a flexible, state-dependent behavior that reflects both circadian timing and energetic demand. Together, these results identify social context as an important and underappreciated determinant of food-entrained circadian biology.
D'aloisio, G.; Gekhtina, A.; Laney, K.; Brown, T.; Moreira-Silva, D.; Leake, A.; Langdale, C.; Gamsby, J.; Gulick, D.
Show abstract
2)BackgroundCircadian rhythm desynchrony (CD) occurs when there is a mismatch between the circadian clock and local time, such as shift work. Mouse models are commonly employed to study CD, but may have significant shortcomings such as environmental masking, a focus only on sleep physiology, and significant variability between study designs. ObjectiveThis study used in vivo telemetry for simultaneous, real-time monitoring of locomotor activity (LA), core body temperature (CBT), and brain activity (EEG) in freely moving C57BL/6J mice to assess CD effects. MethodsFour-month-old C57BL/6J mice (n=11) were surgically implanted with telemeters enabling simultaneous real-time recording of LA, CBT, EEG.: Mice were sequentially exposed to a control condition standard 12:12h light-dark cycle (T24) then 4, 8-day CD paradigms: 10:10 h short day (T20), social jet lag (SJL), repeated 6h phase advances (6A2), and a 3:3 h ultradian cycle (T6)For each paradigm, the final 48h of data (250 Hz) were analyzed. ResultsWe found clear differences in the severity of the effects of each CD paradigm on sleep and circadian fitness, where T20[~]T6>SJL>6A2. CBT revealed broader disruption, but EEG outputs proved the most sensitive indicators of internal desynchrony. ConclusionsEach CD paradigm produced a unique profile across behavioral, physiological, and neural domains. We have also identified Gamma CV as a novel, sensitive metric of CD. These results highlight the necessity of multimodal monitoring to accurately characterize the impact of ecologically relevant stressors on circadian and sleep physiology. Statement of SignificanceCircadian rhythm desynchrony (CD), driven by shift work, jet lag, and modern irregular light exposure, is a major health burden linked to metabolic, neurodegenerative, and neuropsychiatric diseases. However, standard methods for measuring CD in laboratory models often rely on simple locomotor activity, which can "mask" the true extent of internal circadian stress. In this study, we simultaneously monitored brain EEG activity, core body temperature, and motion across four distinct models of circadian stress. We discovered that locomotor activity is a deceptive indicator of health; while mice appeared to show no alterations under several stress paradigms, their brain waves and body temperatures revealed the underlying impact of CD. Specifically, we identified "Gamma CV" as a highly sensitive new brain-wave marker that detects early circuit instability even when behavior appears normal and sleep quantity is preserved. These findings provide a marker for identifying early neurological vulnerability to irregular light schedules, offering a potential bridge to understanding similar gamma brain-wave alterations seen in addiction, early-stage Alzheimers disease, and other disorders.
Kalyanaraman, B.; Ganesh, D.; Kunte, V. A.; Taylor, S. R.; Farkas, M. E.
Show abstract
The c-MYC proto-oncogene regulates cellular proliferation, and its aberrant expression drives a range of human cancers. It also has a bidirectional regulatory relationship with the mammalian core circadian clock, with emerging evidence suggesting that MYC overexpression leads to clock disruption and loss of rhythms. While prior studies have probed MYCs role in clock disruption by overexpressing or mutating the c-MYC gene, our understanding of the endogenous nature of c-MYC is limited. A major gap in knowledge is whether MYC itself is expressed rhythmically and if so, how its timing relates to that of core clock components. To address these shortcomings, we generated a c-MYC reporter and assessed its circadian nature, comparing it to BMAL1 and PER2, and developed a computational model based on these and previous findings to evaluate its role(s). We developed lentiviral constructs for and established a U2OS (common circadian model) reporter cell line expressing luciferase (luc) driven by a human-derived c-MYC promoter sequence. To facilitate comparisons, as part of this work, we also developed a human-sequence derived BMAL1 promoter reporter to more readily recapitulate its behaviors. Using luminometry studies and subsequent data analyses, we demonstrated that the c-MYC promoter oscillated rhythmically in U2OS cells, which possess inherently low levels of c-MYC. Furthermore, we found that c-MYC oscillates out-of-phase relative to BMAL1 and PER2. Using this information, we built a mathematical model to better understand how c-MYCs oscillations at both basal and over-expressed levels affect the clock and vice versa. The model reproduced expected alterations to the core clock resulting from c-MYC overexpression and showed that MYCs role is as a disruptor, although the timing of MYC regulation can minimize its negative impact(s) on circadian timekeeping. This work is the first to assess c-MYCs phase relationships relative to the core clock and to provide evidence for its circadian nature. Author summaryc-MYC is a transcription factor that is highly regulated and plays an important role in cellular proliferation. In cancers, deregulation of c-MYC causes its overexpression, resulting in tumorigenesis. There have been multiple connections demonstrated between MYC and the circadian clock, including the clocks role in MYC expression and that its overexpression can lead to disruptions to the core circadian clock. However, knowledge of the expression patterns of MYC are limited, including whether they occur in a circadian manner. To address this, we developed a c-MYC-luciferase reporter in a human circadian cell model (U2OS). For the first time, we were able to directly assess the rhythmic nature of c-MYC using this tool. Subsequently, we developed a mathematical model to gain insights into the disruptive role of MYC in clock regulation under disease-like conditions and, in turn, the effects of the circadian clock on MYC. We found that c-MYC oscillated in a circadian manner in U2OS cells and that the MYC proteins role is as a disruptor, but its timing can minimize its negative impact(s) on circadian rhythms.
Hartner, J. P.; Muscat, N.; Khan, M.; Linning-Duffy, K.; Zutshi, D.; Ognjanovski, N.; Yan, L.; Watson, B. O.
Show abstract
Circadian rhythms are crucial to biological functions, and cognitive functions such as attention, choice, and preference-related behaviors are modulated by circadian rhythms and disrupted in mood disorders such as Seasonal Affective Disorder (SAD) and Major Depressive Disorder (MDD). These neuropsychiatric diseases can be induced or worsened by alterations to daily light patterns and can also be treated with circadian-timed bright-light therapy, suggesting modulatory effects of light brightness on mood and behavior. While most laboratory rodents are nocturnal, the Nile grass rat (Arvicanthis niloticus) is diurnal, offering a unique model to study light modulation effects relevant to humans. In this work, we track daily activity in male and female grass rats under varied lighting for several weeks, revealing sex-specific circadian patterns and responses. These findings establish a foundation for mechanistic studies of light effects on mood-related brain circuits in diurnal animals.
Smith, K.;Mekbib, T.;Rollins-Hairston, A.;Suen, T.;Duong, H.;Benveniste, M.;DeBruyne, J.
Show abstract
The circadian clock system drives rhythms in gene expression, tailoring an organisms behavior and physiology to the [~]24-hour day-night environmental cycle. The mechanisms underlying this system are believed to be largely the same between adult males and females, but recent findings are starting to challenge this notion. Menstrual/estrous cycles (e-cycles) in females are known to modulate a variety of circadian-controlled behaviors. However, their interaction with circadian rhythmicity at the transcriptional level remains unknown. To assess the interaction between e-cycles and the circadian clock, we explored densely collected mouse liver circadian transcriptomes across all four phases of the e-cycle. Surprisingly, we found that the circadian rhythmicity in female livers was strikingly dependent on e-cycle phase, with the largest differences aligning with pre- and post-ovulation. The differential rhythmicity followed prominent yet distinct patterns, which extend and diversify overall sex differences in rhythmic gene expression. Our data also predict that sex and e-cycle may modulate how core circadian transcription factors may regulate expression of some output genes, but other mechanisms appear complex and potentially multifaceted. Nonetheless, the differences in rhythmicity impact broad aspects of liver function, making this panoramic dataset a novel resource for identifying and exploring novel interactions of the estrous cycle on gene expression and overall liver functions.
Wu, B.; JA, W.
Show abstract
Feeding is a fundamental animal behavior. Increasing evidence suggests that the timing of food intake--rather than the amount or quality alone--contributes to maintaining health. Although mistimed eating can reset peripheral clocks and desynchronize them from central pacemakers to affect physiology and metabolism, how peripheral clocks can in turn shape rhythmic feeding behavior is less well understood. Here, we investigated the contribution of peripheral clocks to circadian feeding behavior in Drosophila males. Using high-resolution feeding assays combined with complementary analytical approaches that assess both rhythmicity and time-resolved dynamics, we examined the roles of distinct peripheral cell types in feeding regulation. This study reveals the involvement of midgut enteroendocrine cells (EECs) and enterocytes (ECs) in maintaining the stability and strength of feeding rhythms, whereas the fat body clock modulates baseline levels of food intake. Beyond serving as an output behavior of circadian rhythms, feeding also acts as an effective behavioral Zeitgeber that drives molecular clocks. In the absence of the dominant Zeitgeber--light--midgut oscillations decay during prolonged ad libitum feeding in constant darkness, whereas feeding/fasting cycles enable the autonomous persistence of clock oscillations in EECs but not in ECs. These findings are suggestive of regulatory feedback between midgut EECs and feeding, highlighting how timed feeding or dietary interventions could influence metabolic health via specialized gut cells.
Prabhat, A.; Naidu, S.; Stumpf, I. G.; Clemons, E.; Nwadialo, S. O.; Rozmus, E.; Wen, Y.; Esser, K. A.; Schroder, E. A.; Delisle, B.
Show abstract
Mice housed at room temperature (RT, 25{degrees}C) experience chronic mild cold stress compared with those housed at thermoneutrality (TN, 30{degrees}C). We hypothesized that cold stress suppresses circadian transcript expression in peripheral tissues. RNA-seq of hearts, livers, and diaphragms collected every 4 hours over 48 hours in constant darkness identified mRNA transcripts exhibiting {approx}24-hour rhythms (REGs). TN produced tissue-specific changes in REG number, identity, and phase without altering core circadian clock transcript levels. Cardiac REGs increased 4-fold, diaphragm REGs 1.5-fold, and hepatic REG identity shifted substantially. GO analysis revealed coordinated reorganization of rhythmic metabolic programs in the heart and liver. These data demonstrate that ambient housing temperature has tissue-specific effects on the number, identity, and temporal organization of rhythmically expressed transcripts in the heart, liver, and diaphragm.
Fan, Y.; Tian, M.; Xu, J.; Cao, M.; Zheng, N.; Liu, Y.; Ai, S.; Liang, Y. Y.; Wang, J.; Hu, X.; Tan, X.; Benedict, C.; Wing, Y. K.; Zhang, J.; Feng, H.
Show abstract
Study Objectives To develop and initially validate the Circadian Disruption Index (CDI), a self-report measure of circadian disruption, and obtain preliminary evidence of its responsiveness to circadian health education. Methods In Study 1, 244 participants completed a 22-item CDI version and external measures. The sample was randomly divided for exploratory and confirmatory factor analyses. Internal consistency, external associations, and discrimination of poor sleep quality were examined. In Study 2, 72 postgraduate students completed the CDI before and 1 week after a 16-hour circadian health education program in an uncontrolled pre-post design. Results Analyses yielded a 15-item, three-factor structure comprising rhythm stability and light exposure, behavioral habits and diet, and sleep quality and subjective complaints. Total-score internal consistency was acceptable (Cronbach's = 0.871). Confirmatory factor analysis showed a comparative fit index of 0.902 and a root mean square error of approximation of 0.072, although the Tucker-Lewis index was 0.882. CDI scores correlated with sleep quality, chronotype, corrected midsleep on free days, depression, and anxiety, but not social jetlag. The area under the curve for poor sleep quality was 0.807 (95% confidence interval, 0.753-0.862), with an exploratory cutoff of [≤] 23. In Study 2, CDI scores decreased from 22.26 to 19.88 (p = 0.002; Cohen's dz = 0.36). Conclusions The CDI demonstrated satisfactory internal consistency, a meaningful multidimensional structure, and responsiveness to short-term changes following circadian health education, supporting its potential utility for assessing circadian disruption and monitoring circadian-related behavioral changes.
Wexler, Y.; Huang, D.; Yan, J.; Gothilf, Y.
Show abstract
The teleost pineal gland is an eye-like photoreceptive organ with a central role in the circadian clock system, primarily through its melatonin-producing photoreceptor cells. However, the functional molecular interactions between pineal photoreceptors, accessory cells predicted to support photoreceptor function, and projecting neurons remain incompletely understood. Here, we integrated single-cell zebrafish pineal transcriptomes with bulk circadian and light-response pineal transcriptomes. Combined analysis of two single-cell datasets identified novel photoreceptor and neuronal subtypes, including parietopsin-expressing cone-like cells and neurons expressing markers of neuronal maturation. Integration with the light-response dataset revealed light inhibition of photoreceptor opsin genes. Integration with circadian transcriptomes from wildtype fish and fish expressing the clock-disrupting dominant-negative CLOCK ({Delta}CLK) in pineal photoreceptors revealed cell-type-specific rhythmicity. Despite comparable expression of {Delta}CLK, photoreceptor subtypes differed in sensitivity to rhythm disruption, with rod-like cells (rods) most severely affected. In neurons, despite the absence of {Delta}CLK expression, rhythm disruption was comparable to that of rods. Moreover, rhythmic neuronal markers and rhythmic photoreceptor markers exhibited a similar circadian pattern, peaking mainly during the early night. These observations suggest that clock function in neurons depend on photoreceptor output. In contrast, accessory cell rhythmic markers were relatively resistant to {Delta}CLK disruption and peaked predominantly around subjective dawn, consistent with partially autonomous clock function. To facilitate comparative analysis of gene expression, rhythmicity and light responsiveness across pineal cell types, we developed the Zebrafish Pineal Transcriptomics Viewer. Our findings reveal a temporally structured and functionally heterogeneous organization of the zebrafish pineal gland.
Cook, J. N.; Gevorgyan, M.; Armitage, J.; Jones, J.
Show abstract
The circadian system is an important regulator of reward-related neural function and behavior. Dopamine (DA) release in the nucleus accumbens is a key component of reward processing, yet how circadian timing shapes DA release in relation to reward behavior remains unclear. Here, we investigated circadian rhythms in DA release and reward behavior using long-term fiber photometry paired with an automated reward delivery and measurement system. We found two distinct circadian rhythms in DA release: spontaneous DA, reflecting ongoing DA release not associated with reward, and reward-evoked DA, reflecting transient DA response during reward. Spontaneous DA peaked during the early subjective day, whereas reward-evoked peak DA peaked near the day-to-night transition. Both rhythms were distinct from reward behavior, which peaked during the early subjective night. Linear modeling further showed that the relationship between reward-evoked DA and reward behavior depended on circadian time, with greater DA responses occurring between late subjective day and early subjective night. Spontaneous baseline and reward-evoked DA were also negatively correlated, and this relationship was likewise modulated across circadian time. Together, these findings support a model in which circadian modulation of baseline DA may alter the gain of reward-evoked signaling, amplifying DA responses across behaviorally relevant times of day.
Ben-Ezra, S.; Sagi, D.; Mellijor, J. L.; Harii, S.; Sinniger, F.; Appelbaum, L.; Levy, O.
Show abstract
Artificial light at night (ALAN) disrupts natural light cycles and interferes with light-dependent biological processes. However, the effect of ALAN on cellular processes in wildlife is unclear. We examined diel brain transcriptomic alterations in the diurnal damselfish Dascyllus aruanus by comparing fish exposed to three consecutive nights of ALAN with control fish, sampled during both the day and night. ALAN partially disrupted circadian regulation transcription, altering diel expression of the core clock regulator bmal1 and glucocorticoid-regulated genes. At night, ALAN triggered activation of genes indicative of neuronal activity and acute neural stress, along with suppression of restorative nocturnal processes. The following day, the transcriptomic divergence between ALAN-exposed and control fish expanded, with widespread downregulation of genes governing vascular homeostasis, coagulation, and immune function. Together, these findings indicate that ALAN reshapes brain transcriptomic programs across the entire diel cycle, identifying molecular signatures of physiological disruption in light-polluted marine environments.
Clarke, R.; Shahnawaz, S.; Hirten, R.; Rodrigues, J.; Landell, K.; Danieletto, M.; Ona, G.; Ensari, I.
Show abstract
Background: Female chronic pelvic pain disorders (CPPDs) are highly prevalent and frequently accompanied by sleep disturbance and autonomic nervous system (ANS) dysregulation. Heart rate variability (HRV), a non-invasive index of ANS function, may provide an objective, physiological correlate of sleep health and can be monitored using wearable devices, enabling a continuous, scalable approach. Objectives: This study examined whether wearable-derived daily HRV metrics are associated with self-reported sleep disturbance in women with CPPD(s) compared with healthy controls, using epoch-level data and generalized additive models. Methods: We conducted a retrospective observational study using up to 90 days of data from a mobile health research app. Participants were 128 women with CPPD(s) and 63 demographically matched healthy controls, who completed a daily PROMIS-based 3-item sleep disturbance questionnaire and wore Fitbit devices that provided 5-minute HRV epochs. Primary predictors were high frequency (HF) and low frequency (LF) power and root mean square of successive differences (RMSSD), with group (CPPD vs control), daily pain severity, and menstrual status as covariates. We fit separate generalized additive mixed models (GAMMs) for each HRV metric with a nonlinear smooth term and an HRV x Group interaction. Results: Higher HF and RMSSD were associated with lower sleep disturbance scores, and these associations were stronger in controls than in the CPPD group (HF x group B {approx} -1.59, p < 0.00010; RMSSD x group B {approx} -0.58, p < 0.0001). LF showed a more complex pattern but also differed by group (B {approx} -0.531, p < 0.0001). HRV smooth terms were highly nonlinear, and models explained ~8-9% of deviance in sleep disturbances. Pain severity and menstrual bleeding were strongly associated with worse sleep. Conclusion: These findings indicate small but consistent associations between wearable-derived HRV metrics and daily sleep disturbances in women with CPPD(s) and healthy controls, with weaker associations in CPPD(s). Integrating continuous HRV with symptom tracking could support low-burden and multimodal monitoring of sleep health in chronic pelvic pain, but prospective validation is needed before HRV can be used for diagnostic or treatment response decision making.
Yin, L.; Lee, C. W.; Wong, A.
Show abstract
Background: Circadian rest-activity rhythms weaken with age, but whether sleep disorders modify this trajectory is unknown. Methods: We analyzed wrist accelerometry data from 4,386 participants aged 6-80 years in the 2011-2012 National Health and Nutrition Examination Survey (NHANES). Circadian features were extracted using cosinor analysis and nonparametric methods; a Circadian Disruption Index (CDI) was constructed from five standardized components. Survey-weighted regression with natural cubic splines and Wald F-tests tested age-by-sleep-disorder interactions using Taylor series linearization for variance estimation. Results: Doctor-diagnosed sleep disorder (N = 360, 8.2%) was associated with significantly different age-related trajectories of amplitude (F(2,17) = 11.24, p = 0.0008) and MESOR (F(2,17) = 8.22, p = 0.0032), both surviving Bonferroni correction (p < 0.006). CDI was higher in those with a sleep disorder (0.290 vs. 0.131, p < 0.001) and was independently associated with higher BMI (beta = 1.33 kg/m2, p < 0.001), higher HbA1c (beta = 0.089%, p = 0.004), greater diabetes prevalence (beta = 3.8 percentage points, p < 0.001), and worse depressive symptoms (beta = 0.43 PHQ-9 points, p = 0.020). Sensitivity analyses using a broader sleep problem exposure did not replicate these interactions. Conclusions: Doctor-diagnosed sleep disorders are associated with an altered age-related decline in circadian amplitude and mean activity level. CDI was independently linked to cardiometabolic and depressive outcomes, supporting a mechanistic connection between clinically significant sleep pathology and circadian disruption across the lifespan.
Cavon, J.; Perez, C.; Quinn-Bohmann, N.; Magis, A. T.; Gibbons, S. M.
Show abstract
Emerging evidence links the gut microbiome to sleep quality, yet measuring sleep at scale remains challenging. Commercial wearables, such as Fitbit, capture objective sleep and activity data in naturalistic settings. We integrated Fitbit data from a large, deeply-phenotyped cohort with paired lifestyle and health questionnaires. Wearable-derived measures aligned well with self-reported sleep, activity, and happiness. We identified dozens of covariate-adjusted associations between Fitbit-derived sleep features, lifestyle factors, and multi-omic data. Among molecular feature sets, the gut microbiome showed the greatest number of associations with sleep quality: butyrate-producing genera were positively associated with sleep and amplified the benefits of physical activity. Oscillospira, in particular, was consistently associated with better sleep. In blood, insulin, omega-3, and cortisol correlated with poorer sleep, whereas lower alcohol intake and mineral supplements correlated with better sleep. These robust, covariate-adjusted findings advance mechanistic understanding of the gut-sleep axis and broader molecular and lifestyle determinants of sleep quality.
Xia, Y.; Louis, V.; Emery, P.
Show abstract
Circadian ([~]24 h) rhythms are essential for the survival of most organisms, as they optimize physiology and behavior with the time of day. They are defined by three fundamental properties: they are driven by a self-sustained molecular oscillator, entrained by environmental cues such as light and temperature, and temperature-compensated, whereby circadian period remains close to 24 h over a physiological range of temperatures. The molecular basis of temperature compensation remains incompletely understood. Here, we build on previous studies supporting a conserved and important role for phosphorylation-dependent mechanisms in the control of temperature compensation. We found that reducing the activity of two highly conserved circadian kinases, DBT (casein kinase [CK] 1) and CK2, disrupts temperature compensation in Drosophila. Genetic analyses indicate that DBT and CK2 act through distinct pathways that have additive effects on temperature compensation. DBT acts through the perShort phosphorylation cluster and the S47 phosphodegron of the core clock protein PER, both of which are required for normal thermal compensation. In contrast, CK2 acts through a phosphocluster in TIM as well as PER S45 residue. Interestingly, simultaneous disruption of both pathways causes accumulation of hyperphosphorylated PER, which is inefficiently cleared from the nucleus of circadian pacemaker neurons. Combined with previous work, our findings support a central and unifying role for nuclear PER phosphorylation dynamics in buffering circadian period against environmental temperature fluctuations.
Lam, M. T. Y.; Askari, K.; Changiz Ashtiani, K.; Li, Y.; Andrews, N. A.; Panda, S.
Show abstract
The effects of diet quality and timing on sleep quality remain poorly understood, particularly at the level of sleep microarchitecture. Traditional visual scoring captures only coarse sleep stages, overlooking the marked heterogeneity of electroencephalographic (EEG) patterns in non-rapid eye movement (NREM) sleep of mice. Here, we apply a pipeline that combines EEG feature extraction with unsupervised machine-learning-based clustering to resolve discrete NREM substates and ask how a high-fat diet (HFD) and time- restricted feeding (TRF) affect sleep microarchitectures. HFD increases sleep latency and sleep fragmentation; both abnormalities were ameliorated by active phase TRF. Clustering of 10s epochs identified two high-amplitude NREM substates sensitive to TRF: Cluster 1, enriched in low-delta power and peaking early in the light phase (ZT 0-6), consistent with canonical slow-wave sleep, and Cluster 6, characterized by elevated alpha, sigma, and beta power and peaking in the latter half of the light phase (ZT6-12). TRF increases the frequency of both NREM substates, particularly within longer uninterrupted sleep episodes during the light phases. These findings introduce an objective framework for quantifying murine sleep microarchitecture and show that aligning caloric intake with the circadian active window mitigates HFD-induced macro-level sleep disruption while selectively enhancing two physiologically distinct NREM substates. Significance StatementTime-restricted eating - targeting food intake to a defined window during the circadian active phase - confers well-established metabolic benefits, but its impact on sleep is largely underexplored. Using continuous EEG/EMG recordings, we show that an active- phase eating window mitigates high-fat-diet-induced sleep disruption in mice. We employed a novel machine-learning pipeline, further revealing that timed eating selectively increases distinct NREM substates, demonstrating that "when we eat" fine-tunes the macro- and microarchitecture of sleep. These insights lay the foundation for future translational studies and clinical trials aimed at harnessing timed eating to enhance both metabolic and sleep health.
Yousef, Z.; Ramabadran, V.; Scharf, M.; Androulakis, I. P.
Show abstract
BackgroundSocial jet lag (SJL), the discrepancy timing between work nights and free nights, reflects schedule-related circadian misalignment. Time-stamped CPAP adherence records may provide objective, longitudinal estimates of sleep timing and could augment conventional CPAP reports by adding information on sleep regularity and weekday-weekend misalignment. ObjectivesTo quantify CPAP-derived SJL in two independent clinical cohorts, characterize its behavioral correlates and age-related patterns, and assess cross-site reproducibility. MethodsWe analyzed CPAP-derived sleep timing in patients from Rutgers-RWJ Health (RWJ, N = 1,437) and Hackensack Meridian Health (HMH, N = 1,510) with at least 31 valid nights and at least one valid work night and free night. Mid-sleep on work nights (MSW) and free nights (MSF) was estimated using circular statistics. SJL was defined as the absolute circular difference between MSF and MSW and categorized as none (<1 h), moderate (1-2 h), or severe ([≥]2 h). Sleep duration, free-night rebound, age-stratified prevalence, and cross-site differences were evaluated using nonparametric and categorical tests. ResultsSJL was right-skewed at both sites, with median values below 0.5 h at RWJ and HMH. SJL >1 h was present in 21.2% and 16.4% of patients, respectively; severe SJL occurred in 4.0% and 2.8%. Moderate and severe SJL were associated with shorter work-night sleep and greater free-night rebound, consistent with weekday restriction and weekend compensation. SJL prevalence and variability were highest in younger and middle-aged adults, particularly those aged 26-50 years, and declined markedly after age 65. Core timing phenotypes, including MSW, MSF, and free-night rebound, were highly reproducible across sites despite modest differences in absolute sleep duration and overall SJL prevalence. ConclusionsIn CPAP-treated cohorts, SJL is common but usually modest, is associated with weekday sleep restriction and free-night rebound, and declines substantially with age. These findings support the use of routinely collected CPAP data as a scalable, low-burden source of device-anchored circadian screening phenotypes. CPAP-derived SJL may augment standard adherence reports by helping identify patients who warrant further behavioral, circadian, or activity-based assessment.
Seizer, L.; Matuskov, M. G.; Gostner, J.; Schubert, C.
Show abstract
The cortisol awakening response (CAR) marks the transition from rest to wake phase by a sharp increase in cortisol levels upon awakening in the morning. This increase may assist in cognitive and behavioral awakening, but its function is not fully understood yet. In this pilot study we aimed to provide first data on the influence of immune system activity on the CAR. Thereby, a within-subject analysis approach was applied to avoid confounding by between-subject bias and improve inference of the results. Three healthy subjects collected their overnight urine for analysis of neopterin (Th1 immune activation marker) and sampled saliva at 0, 30, and 45 minutes after awakening in the morning for cortisol determination and CAR estimation. Additionally, subjects wore an EEG-headband overnight for objective determination of the awakening timepoint. Random-effects models were computed to estimate the effect of overnight neopterin on the CAR. There was a significant positive effect of overnight neopterin levels on the CAR, indicating that overnight Th1 immune activation may predict the dynamic increase of cortisol in the morning, with higher immune levels leading to a stronger CAR. These results provide first evidence for the immunological awakening hypothesis and a potential role of the CAR in the maintenance of circadian immune rhythms, but given the small number of participants, findings should be interpreted as exploratory.